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The Gut-Hormone Connection: Why Your Hormones Might Actually Be Starting in Your Gut

Writer: Lucy Kloessing
Lucy Kloessing
Jun 22
3 min read

Updated: Jul 8

If you've been struggling with bloating, PMS, painful periods, acne, fatigue, mood changes or irregular cycles, your hormones may not be the only place we need to look.


One of the biggest misconceptions in women's health is that hormone symptoms are always caused by the hormones themselves. In reality, your gut plays a huge role in how hormones are produced, metabolised and eliminated.


When gut health is compromised, it's common to see hormone imbalances follow. Let's break down why.


Hormones need a healthy gut to leave the body


Hormones such as oestrogen, progesterone and testosterone are processed by the liver before being sent to the gut for elimination. A healthy gut microbiome helps ensure excess hormones are excreted efficiently. But when the gut is out of balance, those hormones may be reabsorbed into circulation rather than leaving the body.


One of the key players here is an enzyme called beta-glucuronidase. When levels become elevated, often due to gut dysbiosis (an imbalance in gut bacteria), oestrogen can be recycled back into the bloodstream instead of being eliminated.


This can contribute to symptoms such as:

  • PMS

  • Painful or heavy periods

  • Hormonal acne

  • Breast tenderness

  • Mood changes

  • Oestrogen dominance


Your gut helps regulate inflammation


Around 70% of your immune system lives within your gut, making it a major regulator of inflammation throughout the body.


When the gut lining becomes irritated or the microbiome is disrupted, inflammation can increase. Chronic inflammation places stress on the body and can interfere with thyroid function, adrenal hormones and reproductive hormones.


This often shows up as:

  • Fatigue

  • Brain fog

  • Anxiety

  • Low mood

  • Irregular cycles

  • Difficulty losing weight


Your gut produces many of the chemicals that influence how you feel


Around 90% of the body's serotonin is produced in the gut.

While serotonin made in the gut doesn't directly cross into the brain, the gut and brain communicate constantly through the gut-brain axis. A healthy digestive system supports healthy signalling between the gut, brain and nervous system, influencing mood, stress resilience, sleep and overall wellbeing.


Your gut absorbs the nutrients your hormones rely on


Hormone production requires a steady supply of vitamins, minerals and amino acids.

If digestion or absorption is impaired, you may struggle to absorb nutrients like zinc, magnesium, selenium, B vitamins and essential fatty acids, all of which are important for healthy hormone production and detoxification.


How to support both your gut and your hormones


The good news? Supporting your gut often has a ripple effect throughout the rest of your body.

Here are some of the foundations I focus on with clients.


Eat for your microbiome


Aim for a wide variety of colourful plant foods throughout the week. Different fibres feed different beneficial bacteria, helping create a diverse and resilient microbiome.

Include foods like:

  • Legumes

  • Garlic and onions

  • Leeks

  • Oats

  • Berries

  • Nuts and seeds

  • Fermented foods like sauerkraut or kefir (if tolerated)


Prioritise digestion


Healthy digestion is about more than what you eat. It's also how you eat.

Slow down at meals, chew thoroughly and eat in a relaxed state. Supporting stomach acid and digestive function can improve nutrient absorption and reduce digestive symptoms.


Manage stress


Stress and gut health are deeply connected.

Chronic stress can alter the gut microbiome, increase intestinal permeability and impact digestion. It also affects the hormones that regulate your menstrual cycle.

Simple daily practices like walking, breathwork, Pilates, time in nature or mindfulness can make a meaningful difference.


Reduce your toxic load where you can


We can't avoid every environmental chemical, but we can reduce unnecessary exposure.

Small swaps like choosing glass over plastic, eating more whole foods, filtering your water where possible and opting for gentler personal care products can help reduce the overall burden on your detoxification pathways.


Consider functional testing


Persistent gut or hormone symptoms often deserve a closer look.

Functional stool testing, such as a GI-MAP, can provide insight into your gut microbiome, inflammation, digestive function and potential infections or imbalances. Combined with a thorough health history, it helps create a treatment plan that's tailored specifically to you.


The bottom line


Your gut and hormones are constantly communicating.

When we support the health of the microbiome, improve digestion, reduce inflammation and ensure hormones can be metabolised effectively, it's common to see improvements not only in digestive symptoms but also energy, mood, skin and menstrual health.


Rather than simply masking symptoms, I believe in understanding why they're happening in the first place.

If you're experiencing ongoing hormone symptoms alongside digestive issues, it may be time to look beyond your hormones alone.


At Kin Naturopathy, I take a root-cause approach using personalised nutrition, lifestyle medicine, evidence-informed herbal medicine and functional testing where appropriate, helping you understand your body and support it in a way that feels sustainable.


If you're ready to get to the bottom of your symptoms, you can book a consultation or a free discovery call to find out whether naturopathy is the right fit for you.

 
 
 

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